Welcome to CAB at St. Jude

The CAB DevOps Group focused on creating and maintaining core bioinformatics services and infrastructure to best serve the research community at St. Jude Children’s Research Hospital.

Technologies and methods

The DevOps team developed automapper could handle data from:

• ATAC-Seq
• ChIP-Seq
• RNA-Seq
• WES
• WGS

Data Management

• Custom DB Design via Design and implementation of centralized relational DB (MySQL, PostgreSQL, etc.) and distributed NoSQL DB (MongoDB, Cassandra, etc.)
• User-Friendly DB Access via Design and implementation of customized web portals, RESTful-compliant endpoints

High-Performance Computing

• Solutions with Supercomputer Architecture via Design and implementation of MPI/OpenMP-based algorithms
• Solutions with GPU Architecture via Design and implementation of CUDA-enabled algorithms
• Solutions with Cloud-based Architecture via Design and implementation of algorithms on distributed big-data stacks such as Spark/Hadoop

Data visualization

• Visualization Analysis via Optimization on data structure and rendering algorithms aiming at high-performance visual creation and smooth user experiences
• Solutions on Traditional Visualization via Custom 2D and 3D static and interactive data visualization on small/medium-size data sets
• Solutions on Remote/Web-embedded Visualization via Design and implementation of visualization portals enabling remote interaction with large/volumetric data sets

Joining St. Jude

If you are interested in joining please go to the recruitment page.