St. Jude Center for Applied Bioinformatics(CAB)

Our website is based on jekyll

• The open source templates were forked from Dr. Stephan Sanders,
• Earlier version designed and shared by the labs of Dr. Allan Drummond and Trevor Bedford
• Full Publication list using al-folio adapt from Maruan Al-Shedivat based on jekyll plugin jekyll-scholar
• We greatful thank them for sharing code and knowledge.
• We added plugin jekyll-spaceship to improve table shown by markdown.
• Check script/README.md for more customization

If you use conda, these will help you start build for your own

• Step1: Fork https://github.com/stjudecab/stjudecab.github.io
• Step2: on you forked git, click setting and get your own repository name
• Step3: Under linux

  git clone https://github.com/**yourid**/stjudecab.github.io
  #conda create -n iobuild python=3.8 ruby=2.6.3
  #conda activate iobuild
  conda env create -f .condaenv.xml
  conda activate iobuild
  gem install bundle
  bundle install
  #local debug, would rebuild automatically everytime you changed a file
  bundle exec jekyll serve --host **$yourip** --port 5050 --livereload
  #after confirmation of the changes you want
  bundle exec jekyll build
  git commit "update" && git push
  sh script/deploy
  #Note it might take a few minutes for github.io to update, be patient
  

The website is deployed using GitHub Pages and the source code is available on GitHub. Please feel free to reuse this code (making sure to cite the Maruan, Sanders, Bedford and Drummond lab as the original sources of the lab website template).