Zhongshan Cheng

Bioinformatics Research Scientist
St. Jude Profile
ORCID
GitHub
Google Scholar
Email
zhongshan.chengobfuscate#stjude.org

Overview

Zhongshan thinks himself as a computational biologist, although he is a bioinformatics research scientist in St Jude Children’s Hospital. He likes to read biologically related papers and plays with publicly available human genetics and cancer genomics data. If he can understand these data very well and has some new ideas after evaluating these open data, he would like to write some codes to make the integrative analyses easier. He is a big fun for SAS statistical language and MATLAB language, although most people now like R and Python. Of course, he needs to use R or Python scripts, and sometimes, he prefers to writing codes in Perl, an older language compared to the hot Python language. He also likes fishing and climbing mountains. So now you know Zhongshan a little better!

Human Genetic and Cancer Genomic Data zhongshan knows how to analyze:

  • Genome-wide association study (GWAS)
  • Transcriptome-wide association study (TWAS)
  • Common association analysis
  • Statistical analysis
  • Pathway enrichment analysis
  • Non-coding driver mutation screening
  • Somatic mutation calling
  • CNV imputation

Education

  • PhD, The Unviersity of Hong Kong, Hong Kong, P.R.CHINA (2015)
  • Post-doc, Queen’s University, Canada (2016)
  • Post-doc, Yale University, US (2017)

Professional Experience

Time Position PI/Supervisor Institution
2019- Bioinformatics Research Scientist Gang Wu / St. Jude Children’s Research Hospital
    Ti-Cheng Chang  
2017-2019 Postdoctoral Associate Joel Gelernter Yale University, US
2015-2016 Postdoctoral Associate Tomas Babak Queen’s University, Canada
2010-2011 Research Assistant Jie Zhou The University of Hong Kong, Hong Kong