my-deeptools

my-deeptools is a deeptools variety with several customized additional options:

1. Move Legend to outside of figure
2. Fix y-axis inward when using different ymax so the profiles have same width to heatmap
3. Add –repgrplist option to combine replicates for plotProfile
4. Limit title character to 15 and auto break into multiple lines

It’s developed by Dr. Beisi Xu based on deeptools 3.5.1 from Max-Planck-Institute

conda install deeptools==3.5.1
pip install git+https://github.com/xubeisi/deepTools.git@4e19dcbb4c79be497c306be928280165c74101f3

• Source

my-bedtools2

my-bedtools2 is a bedtools2 variety with several customized additional options.

It’s developed by Dr. Beisi Xu based on bedtools 2.29.0 from Quinlan laboratory

• Source
• Manual